Thunder Eyes, now Craig's father-in-law, in 1836 had allowed Henry Spalding to establish his first mission close to his village. By the time Craig arrived, Spalding's relationship with the Nez Perce had deteriorated. Craig sided with the Nez Perce in their disputes that led, in turn, to the decision in 1842 by the American Missionary Board to close down Spalding's mission. Due to the timely intervention of Marcus Whitman, the crisis was averted and the relationship between Craig and Spalding gradually improved.
While not all of the Nez Perce liked Craig, they respected his opinion and his dedication to his Nez Perce wife and family and, likewise, Craig respected the culture of the Nez Perce. In the aftermath of the killing of Marcus Whitman in 1847, Craig sheltered the Eliza and Henry Spalding when it was feared that the same thing might happen at Lapwai. Craig's relationship with the Nez Perce was further cemented with his role as an interpreter in the negotiations that led to the 1855 treaty that established the Nez Perce reservation. As a reward for his services, Article Ten of the 1855 treaty allowed Craig to keep his homestead on the new reservation.
In the aftermath of the treaty, the Yakama nation went to war and Governor Isaac Stevens appointed Craig a Colonel in the territorial militia. Craig also briefly worked as a subagent for the Nez Perce. He remained in Nez Perce country and died in 1869.